شبیه سازی دینامیک مولکولی پروتئین همولیزین باسیلوس پامیلوس و داکینگ آن با کلسترول و پیشگویی تغییرات کنفورماسیونی این پروتئین در طراحی دارو با کمک بیوانفورماتیک

Adinarayana K.P.S. Devi R.K. (2011) Protein-Ligand interaction studies on 2,
4, 6-trisubstituted triazine derivatives as anti-malarial DHFR agents using
AutoDock Bioinformation. 6: 74-82.
Alouf J.(2003) Molecular features of the cytolytic pore-forming bacterial protein
toxins Folia Microbiologica. 48: 5-16.
Alouf J.E, Geoffroy C. (1988) Production, purifcation, and assay of streptolysin
O Methods in Enzymology. 165: 52-59.
Billington SJ, Songer J.G. Jost B.H. (2001) Molecular characterization of the poreforming toxin, pyolysin, a major virulence determinant of Arcanobacterium
pyogenes Veterinary Microbiology. 82: 261-274.
Billington S.J. Jost B.H. Cuevas W.A. Bright K.R. Songer J.G. (1997) The
Arcanobacteriumpyogenes hemolysin, pyolysin, is a novel member of the
thiol-activated cytolysin family Journal of Bacteriology. 179: 6100-6106.
Bischofberger M. Gonzalez M.R. van der Goot F.G.(2009) Membrane injury by
pore-forming proteins Current Opinion in Cell Biology. 21: 589-595.
Gilbert R. (2002) Pore-forming toxins Cellular and Molecular Life Sciences. 59: 832-844.
Gonzalez M. Bischofberger M. Pernot L. Van Der Goot F. Freche B. (2008)
Bacterial pore-forming toxins: the (w) hole story Cellular and Molecular
Life Sciences. 65: 493-507.
Gonzalez M.R. Bischofberger M. Frêche B. Ho S. Parton R.G. van der Goot F.G.
(2011) Pore-forming toxins induce multiple cellular responses promoting
survival Cellular Microbiology. 13: 1026-1043.
Hotze EM, Tweten R.K. (2012) Membrane assembly of the cholesterol-dependent
cytolysin pore complex Biochimica et Biophysica Acta Biomembranes.
1818: 1028-1038.
Iacovache I, van der Goot F.G. Pernot L. (2008) Pore formation: an ancient yet
complex form of attack Biochimica et Biophysica Acta Biomembranes.
1778: 1611-1623.
Ivetac A. Mark S.P. (2008) Molecular dynamics simulations and membrane
protein structure quality EurBiophys Journal. 37: 403-409.
Johnson M. (1977) Cellular location of pneumolysin FEMS Microbiology
Letters. 2: 243-245.
Laskowski R.A. MacArthur M.W. Moss D.S. Thornton J.M. (1993) Procheck: a
program to check the stereochemical quality of protein structures Journal
of Applied Crystallography. 26: 283-291
Lengauer T. Rarey M. (1996) Computational methods for biomolecular docking
Current opinion in structural biology. 6: 402-406.
Morris G. Goodsell D. Pique M. Lindstrom W. Huey R. Forli S. Hart W. Halliday
S. Belew R. Olson A. (2012) User Guide AutoDock Version 4.2
Ohno-Iwashita Y. Iwamoto M. Mitsui K-i, Ando S. Iwashita S. (1991) A
cytolysin, θ-toxin, preferentially binds to membrane cholesterol surrounded
by phospholipids with 18-carbon hydrocarbon chains in cholesterol-rich
region Journal of Biochemistry. 110: 369-375.
Østensvik Ø, From C. Heidenreich B. O'sullivan K. Granum P. (2004) Cytotoxic
Bacillus spp. belonging to the B. cereus and B. subtilis groups in Norwegian
surface waters Journal of Applied Microbiology. 96: 987-993.
Priest F.G. Goodfellow M. Todd C. (1988) A numerical classifcation of the genus
Bacillus Journal of General Microbiology 134: 1847-1882.
Ramarao N. Sanchis V. (2013) The Pore-Forming Haemolysins of Bacillus
cereus: A Review Toxins. 5: 1119-1139.
Sali A, Blundell T.L. (1993) Comparative protein modeling by satisfactionof
spatial restraints J MolBiol. 234: 779–815
Sanchez R. Sali A. (2000) Comparative protein structure modeling.Introduction and
practical examples with modeler Methods of Molecular Biology. 143:97–129
Scott K.A. Bond P.J. Ivetec A. Chetwynd A.P. Khalid S. Sansom MSP. (2007)
Membrane protein/bilayer interactions: structural bioinformatics via
coarse-grained MD simulations Structure. 16: 621-630
Sritharan M. (2006) Iron and bacterial virulence Indian Journal of Medical
Microbiology. 24: 163.164
Thompson J.R. Cronin B. Bayley H. Wallace MI;(2011) Rapid Assembly of a
Multimeric Membrane Protein Pore Biophysical journal. 101: 2679-2683.
Tweten R. Parker M. Johnson A. (2001). Pore-Forming Toxins. 257pp 15-33. In:
F.Gisou van der Goot (ed). The cholesterol-dependent cytolysins, Springer.
Berlin.
Vesper S.J.J. Vesper M. (2004). Possible role of fungal hemolysins in sick building
syndrome. Advances in Applied Microbiology. 55: 191-213.
Zaaijer H.L. Bouter S. Boot H.J. (2008) Substitution rate of hepatitis B surface
gene Journal of Viral Hepatitis. 15: 239-245.
Zdanovsky A. Zdanovskaya M. Yankovsky N. (2000) Bacterial toxins and their
application Molecular Biology. 34: 168-174